// Copyright (C) 2011  Andrew H. Chan
// 
// This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
// 
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
// GNU General Public License for more details.

#ifndef _INPUT_DATA_H__
#define _INPUT_DATA_H__

#include "typedefs.h"

class Input_data {
    public:
        int read_input(std::string const& file_name);
        uint num_haps; 
        uint segsites; 
        std::vector<std::vector<int> > genotypes;
        std::vector<std::pair<std::vector<int> , std::vector<int> > > pairings;
};
#endif
